Changelog • ctar

ctar 0.2.3 (2024-08-28)

This minor update is mostly focused on documentation.

Bug fixes

19e18b1: Fixed that placo can only accept 2 traits.
f406a97: Modified “z-value” to “z-score.”

Minor tweaks

#26: Filled in the help pages (except examples) for the main functions.
#26: Added in examples in help pages.
1fc071c: Added one vignette.
759025d: Initiated pkgdown website (https://slamballais.github.io/ctar).

ctar 0.2.2 (2024-08-27)

Bug fixes

8f7a2cd: Removed unnecessary values in Imports field.
0c21c9b: Make sure that R CMD CHECK is passed successfully.

Minor tweaks

23d7741: Add R CMD CHECK badge for GitHub.
098a69f: Updated looks of NEWS.md.
#24: Added codecov checks.
832cf03: Added a GitHub Actions for PR commands.
271d077: Modified argument names to fit lintr (e.g., .MAXVAL to maxval).
56baa27: Increase the test coverage.

ctar 0.2.1 (2024-08-27)

Minor tweaks

#10: Added internal functions and checks for the input arguments.
#11: Added p_exp (-log10 p-values) to the output of cpma and fct.
#12: Added tests against the non-subset sumrank, cpma, and fct.
b9c3e56: Added tests to see if p-values are equal to 0.
#16: Modified z_in to z, and p_in to p. Added checks for z.

ctar 0.2.0 (2024-08-26)

Version 0.2.0 extends beyond sumrank and adds a number of necessary features.

New features

#1: Implemented initial testing framework.
a5d2280: Implemented PLACO (“pleiotropic analysis under composite null hypothesis”) as placo.
#6: Implemented CPMA (“cross-phenotype meta-analysis”) as cpma.
#8: Implemented FCT (“Fisher’s combined probability test”) as fct.

ctar 0.1.0 (2024-08-26)

This is the very first version of ctar: cross-trait associations in R. This version purely contains the necessary files to have an R package, as well as an uncleaned version of sumrank. I will add in more features soon!